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eso_pipelines

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eso_pipelines [2025/04/11 08:54] – [Available pipelines] janseneso_pipelines [2025/04/11 13:54] (current) – jansen
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   apptainer exec /software/eso/pipelines.sif [command]   apptainer exec /software/eso/pipelines.sif [command]
 e.g. e.g.
-  apptainer exec /software/eso/pipelines.sifesoreflex molecfit+  apptainer exec /software/eso/pipelines.sif esoreflex molecfit
  
 The apptainer always makes the current directory and the user's home available to commands running inside it. If you need access to data in other directories, these can be ''bound'' to the apptainer to make them available: The apptainer always makes the current directory and the user's home available to commands running inside it. If you need access to data in other directories, these can be ''bound'' to the apptainer to make them available:
-  apptainer exec --bind /my/data/dir:/data /software/eso/pipelines.sif esoreflex gravity +  apptainer exec --bind /my/data/dir:/data /software/eso/pipelines.sif esoreflex 
-This binds ''/my/data/dir'' on the real system to a path ''/data'' inside the apptainer.+This binds ''/my/data/dir'' on the real system to a path ''/data'' inside the apptainer. Or: 
 +  apptainer exec --bind /almastorage /software/eso/pipelines.sif esoreflex 
 +to make all of the disk ''/almastorage'' visible in the container, under that same name (of course the app will still only have access to data where the user has access). 
  
 ESO's site about apptainer has some more information about usage and options, see [[https://www.eso.org/sci/software/apptainer.html]] (skip the part about installation if you run on Sterrewacht workstations, that has already been done for you) ESO's site about apptainer has some more information about usage and options, see [[https://www.eso.org/sci/software/apptainer.html]] (skip the part about installation if you run on Sterrewacht workstations, that has already been done for you)
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 ===== Available pipelines ===== ===== Available pipelines =====
 At the moment , the following pipelines are available in ''/software/eso/pipelines.sif'': At the moment , the following pipelines are available in ''/software/eso/pipelines.sif'':
-| cr2re | efosc |eris | <del>esotk</del> |+| cr2re | efosc |eris | esotk |
 | espda | espdr | fors| giraf | | espda | espdr | fors| giraf |
 | gravity | harps | hawki | iiinstrument| | gravity | harps | hawki | iiinstrument|
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 | nirps | sinfo | spher | uves|  | nirps | sinfo | spher | uves| 
 | vcam| vimos | visir | xshoo | | vcam| vimos | visir | xshoo |
 +Refer to the ESO documentation about startup methods, options, required parameters etc.
eso_pipelines.1744361642.txt.gz · Last modified: by jansen

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